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BIOTAGE psq™hs 96a pyrosequencing system
Psq™Hs 96a Pyrosequencing System, supplied by BIOTAGE, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/psq+hs+96a+system/psq+hs+96a+system/pmc02753619-115-23-27
Average 90 stars, based on 1 article reviews
psq™hs 96a pyrosequencing system - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Polymerase Chain Reaction:

Article Title: Methylation of the CDX2 promoter in Helicobacter pylori-infected gastric mucosa increases with age and its rapid demethylation in gastric tumors is associated with upregulated gene expression.
Article Snippet: Bisulfite-modified DNA (100 ng) was amplified by PCR in 20 μl reactions using 2× Dye Mix polymerase (Enzynomics, Daejeon, Korea) to yield a 347-bp product using the primer set shown in Supplementary Table 1 (available at Carcinogenesis Online). .. PCR was performed using an initial melting step of 94°C for 5 min, followed by 45 cycles of 94°C for 30 s, 54°C for 40 s and 72°C for 30 s, with a final incubation at 72°C for 5 min. Pyrosequencing was performed as described (33) using the sequencing primer in Supplementary Table 1 (available at Carcinogenesis Online)and the PSQ HS 96A System (Biotage AB, Kungsgatan, Sweden). .. Reverse transcription-PCR and real-time quantitative RT-PCR Total RNA was isolated from GC cells or paired clinical samples using the RNeasy kit (Qiagen, Valencia, CA), treated with DNase I (Promega), and reverse transcribed with Superscript II reverse transcriptase (Invitrogen) as described (33).

Article Title: STK31 upregulation is associated with chromatin remodeling in gastric cancer and induction of tumorigenicity in a xenograft mouse model.
Article Snippet: Bisulfite‐modified DNA (100 ng) was amplified by PCR in a 20 μl reaction using 2X Dye Mix polymerase (Enzynomics Co., Ltd.) to yield a 221‐bp product using the following primers: Forward, 5'‐TGT TTG GGG GTA GGT AGT AGT TAG‐3 and reverse, 5'‐CCC TAA ACC CAC ATA CTA AAC TTT C‐3'. .. PCR was performed using an initial melting step of 94 ̊C for 5 min, followed by 40 cycles of 94 ̊C for 30 sec, 59 ̊C for 30 sec and 72 ̊C for 30 sec, with a final incubation at 72 ̊C for 7 min. Pyrosequencing was performed as previously described (17) using a sequencing primer (5'‐AGG AGT AGT GTG GGG TTT‐3') and PSQ HS 96A system (Biotage AB). ..

Article Title: STK31 upregulation is associated with chromatin remodeling in gastric cancer and induction of tumorigenicity in a xenograft mouse model
Article Snippet: Bisulfite-modified DNA (100 ng) was amplified by PCR in a 20 μl reaction using 2X Dye Mix polymerase (Enzynomics Co., Ltd.) to yield a 221-bp product using the following primers: Forward, 5′-TGTTTGGGGGTAGGTAGTAGTTAG-3 and reverse, 5′-CCCTAAACCCACATACTAAACTTTC-3′. .. PCR was performed using an initial melting step of 94°C for 5 min, followed by 40 cycles of 94°C for 30 sec, 59°C for 30 sec and 72°C for 30 sec, with a final incubation at 72°C for 7 min. Pyrosequencing was performed as previously described ( ) using a sequencing primer (5′-AGGAGTAGTGTGGGGTTT-3′) and PSQ HS 96A system (Biotage AB). ..

Article Title: ONECUT2 upregulation is associated with CpG hypomethylation at promoter‐proximal DNA in gastric cancer and triggers ACSL5
Article Snippet: Bisulfite‐modified DNA (100 ng) was amplified by PCR in a 20‐μl reaction using 2× Dye Mix polymerase (Enzynomics, Daejeon, Korea) to yield a 199‐bp product using the primer set shown in Supporting Information Table . .. PCR was performed using an initial melting step of 94°C for 5 min, followed by 40 cycles of 94°C for 30 sec, 59°C for 30 sec and 72°C for 30 sec, with a final incubation at 72°C for 7 min. Pyrosequencing was performed as described using the sequencing primer in Supporting Information Table and the PSQ HS 96A System (Biotage AB, Kungsgatan, Sweden). ..

Incubation:

Article Title: Methylation of the CDX2 promoter in Helicobacter pylori-infected gastric mucosa increases with age and its rapid demethylation in gastric tumors is associated with upregulated gene expression.
Article Snippet: Bisulfite-modified DNA (100 ng) was amplified by PCR in 20 μl reactions using 2× Dye Mix polymerase (Enzynomics, Daejeon, Korea) to yield a 347-bp product using the primer set shown in Supplementary Table 1 (available at Carcinogenesis Online). .. PCR was performed using an initial melting step of 94°C for 5 min, followed by 45 cycles of 94°C for 30 s, 54°C for 40 s and 72°C for 30 s, with a final incubation at 72°C for 5 min. Pyrosequencing was performed as described (33) using the sequencing primer in Supplementary Table 1 (available at Carcinogenesis Online)and the PSQ HS 96A System (Biotage AB, Kungsgatan, Sweden). .. Reverse transcription-PCR and real-time quantitative RT-PCR Total RNA was isolated from GC cells or paired clinical samples using the RNeasy kit (Qiagen, Valencia, CA), treated with DNase I (Promega), and reverse transcribed with Superscript II reverse transcriptase (Invitrogen) as described (33).

Article Title: STK31 upregulation is associated with chromatin remodeling in gastric cancer and induction of tumorigenicity in a xenograft mouse model.
Article Snippet: Bisulfite‐modified DNA (100 ng) was amplified by PCR in a 20 μl reaction using 2X Dye Mix polymerase (Enzynomics Co., Ltd.) to yield a 221‐bp product using the following primers: Forward, 5'‐TGT TTG GGG GTA GGT AGT AGT TAG‐3 and reverse, 5'‐CCC TAA ACC CAC ATA CTA AAC TTT C‐3'. .. PCR was performed using an initial melting step of 94 ̊C for 5 min, followed by 40 cycles of 94 ̊C for 30 sec, 59 ̊C for 30 sec and 72 ̊C for 30 sec, with a final incubation at 72 ̊C for 7 min. Pyrosequencing was performed as previously described (17) using a sequencing primer (5'‐AGG AGT AGT GTG GGG TTT‐3') and PSQ HS 96A system (Biotage AB). ..

Article Title: STK31 upregulation is associated with chromatin remodeling in gastric cancer and induction of tumorigenicity in a xenograft mouse model
Article Snippet: Bisulfite-modified DNA (100 ng) was amplified by PCR in a 20 μl reaction using 2X Dye Mix polymerase (Enzynomics Co., Ltd.) to yield a 221-bp product using the following primers: Forward, 5′-TGTTTGGGGGTAGGTAGTAGTTAG-3 and reverse, 5′-CCCTAAACCCACATACTAAACTTTC-3′. .. PCR was performed using an initial melting step of 94°C for 5 min, followed by 40 cycles of 94°C for 30 sec, 59°C for 30 sec and 72°C for 30 sec, with a final incubation at 72°C for 7 min. Pyrosequencing was performed as previously described ( ) using a sequencing primer (5′-AGGAGTAGTGTGGGGTTT-3′) and PSQ HS 96A system (Biotage AB). ..

Article Title: ONECUT2 upregulation is associated with CpG hypomethylation at promoter‐proximal DNA in gastric cancer and triggers ACSL5
Article Snippet: Bisulfite‐modified DNA (100 ng) was amplified by PCR in a 20‐μl reaction using 2× Dye Mix polymerase (Enzynomics, Daejeon, Korea) to yield a 199‐bp product using the primer set shown in Supporting Information Table . .. PCR was performed using an initial melting step of 94°C for 5 min, followed by 40 cycles of 94°C for 30 sec, 59°C for 30 sec and 72°C for 30 sec, with a final incubation at 72°C for 7 min. Pyrosequencing was performed as described using the sequencing primer in Supporting Information Table and the PSQ HS 96A System (Biotage AB, Kungsgatan, Sweden). ..

Sequencing:

Article Title: Methylation of the CDX2 promoter in Helicobacter pylori-infected gastric mucosa increases with age and its rapid demethylation in gastric tumors is associated with upregulated gene expression.
Article Snippet: Bisulfite-modified DNA (100 ng) was amplified by PCR in 20 μl reactions using 2× Dye Mix polymerase (Enzynomics, Daejeon, Korea) to yield a 347-bp product using the primer set shown in Supplementary Table 1 (available at Carcinogenesis Online). .. PCR was performed using an initial melting step of 94°C for 5 min, followed by 45 cycles of 94°C for 30 s, 54°C for 40 s and 72°C for 30 s, with a final incubation at 72°C for 5 min. Pyrosequencing was performed as described (33) using the sequencing primer in Supplementary Table 1 (available at Carcinogenesis Online)and the PSQ HS 96A System (Biotage AB, Kungsgatan, Sweden). .. Reverse transcription-PCR and real-time quantitative RT-PCR Total RNA was isolated from GC cells or paired clinical samples using the RNeasy kit (Qiagen, Valencia, CA), treated with DNase I (Promega), and reverse transcribed with Superscript II reverse transcriptase (Invitrogen) as described (33).

Article Title: STK31 upregulation is associated with chromatin remodeling in gastric cancer and induction of tumorigenicity in a xenograft mouse model.
Article Snippet: Bisulfite‐modified DNA (100 ng) was amplified by PCR in a 20 μl reaction using 2X Dye Mix polymerase (Enzynomics Co., Ltd.) to yield a 221‐bp product using the following primers: Forward, 5'‐TGT TTG GGG GTA GGT AGT AGT TAG‐3 and reverse, 5'‐CCC TAA ACC CAC ATA CTA AAC TTT C‐3'. .. PCR was performed using an initial melting step of 94 ̊C for 5 min, followed by 40 cycles of 94 ̊C for 30 sec, 59 ̊C for 30 sec and 72 ̊C for 30 sec, with a final incubation at 72 ̊C for 7 min. Pyrosequencing was performed as previously described (17) using a sequencing primer (5'‐AGG AGT AGT GTG GGG TTT‐3') and PSQ HS 96A system (Biotage AB). ..

Article Title: Differential expression and methylation of integrin subunit alpha 11 and thrombospondin in the amnion of preterm birth
Article Snippet: .. Pyrosequencing reactions for ITGA11 and THBS2 gene methylation were conducted with sequencing primers on the PSQ HS 96A System (Biotage AB) according to the manufacturer's protocol ( ). ..

Article Title: STK31 upregulation is associated with chromatin remodeling in gastric cancer and induction of tumorigenicity in a xenograft mouse model
Article Snippet: Bisulfite-modified DNA (100 ng) was amplified by PCR in a 20 μl reaction using 2X Dye Mix polymerase (Enzynomics Co., Ltd.) to yield a 221-bp product using the following primers: Forward, 5′-TGTTTGGGGGTAGGTAGTAGTTAG-3 and reverse, 5′-CCCTAAACCCACATACTAAACTTTC-3′. .. PCR was performed using an initial melting step of 94°C for 5 min, followed by 40 cycles of 94°C for 30 sec, 59°C for 30 sec and 72°C for 30 sec, with a final incubation at 72°C for 7 min. Pyrosequencing was performed as previously described ( ) using a sequencing primer (5′-AGGAGTAGTGTGGGGTTT-3′) and PSQ HS 96A system (Biotage AB). ..

Article Title: ONECUT2 upregulation is associated with CpG hypomethylation at promoter‐proximal DNA in gastric cancer and triggers ACSL5
Article Snippet: Bisulfite‐modified DNA (100 ng) was amplified by PCR in a 20‐μl reaction using 2× Dye Mix polymerase (Enzynomics, Daejeon, Korea) to yield a 199‐bp product using the primer set shown in Supporting Information Table . .. PCR was performed using an initial melting step of 94°C for 5 min, followed by 40 cycles of 94°C for 30 sec, 59°C for 30 sec and 72°C for 30 sec, with a final incubation at 72°C for 7 min. Pyrosequencing was performed as described using the sequencing primer in Supporting Information Table and the PSQ HS 96A System (Biotage AB, Kungsgatan, Sweden). ..

DNA Methylation Assay:

Article Title: Differential DNA methylation of MSI2 and its correlation with diabetic traits
Article Snippet: .. Pyrosequencing assays were designed, optimized, and performed on the PSQ HS 96A System (Biotage AB) according to the manufacturer’s specifications (Pyrosequencing, Qiagen, USA). cg23586172 was not available by pyrosequencing, and we determined the DNA methylation of chr17:55484635, which is closest to cg23586172 (chr17:55484600). chr17:55484635 is named by chromosome base pair location (hg19). .. A PCR set for pyrosequencing was performed for the CpG site, chr17:55484635 ( MSI2 ).

Methylation:

Article Title: Differential expression and methylation of integrin subunit alpha 11 and thrombospondin in the amnion of preterm birth
Article Snippet: .. Pyrosequencing reactions for ITGA11 and THBS2 gene methylation were conducted with sequencing primers on the PSQ HS 96A System (Biotage AB) according to the manufacturer's protocol ( ). ..



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RNA and DNA-based technologies for fluid and tissue identification.

Journal: Genetics and Molecular Biology

Article Title: Applications of massively parallel sequencing in forensic genetics

doi: 10.1590/1678-4685-GMB-2022-0077

Figure Lengend Snippet: RNA and DNA-based technologies for fluid and tissue identification.

Article Snippet: , blood, semen, vaginal secretion, and saliva , PSQ HS 96A System (Biotage) , 8 , 80 , .

Techniques: DNA Methylation Assay